if numel(indices) > 1
    hWait = waitbar(0,'1', ...
            'Name','Exporting Plots ...', ...
            'CreateCancelBtn', ...
            'setappdata(gcbf,''canceling'',1)');
    cleanupWaitbar = onCleanup( @()( delete( hWait )));
    setappdata(hWait,'canceling',0);    
else
    hWait = [];
end
 
for k = indices            
    if getappdata(hWait,'canceling')
        break
    end
 
    if ~isempty(hWait)
        waitStr = [num2str(k) ' / ' num2str(numel(indices))];
        waitbar(k/numel(indices),hWait,waitStr);
    end
 
    plotData(data{k});
end

set(handles.uibuttongroupView, 'SelectedObject', handles.radiobuttonPlotROI);
set(handles.uibuttongroupView, 'SelectionChangeFcn',@uibuttongroupView_SelectionChangeFcn);

function uibuttongroupView_SelectionChangeFcn(hObject, eventdata, handles)
% hObject    handle to the selected object in uibuttongroupView 
% eventdata  structure with the following fields (see UIBUTTONGROUP)
%	EventName: string 'SelectionChanged' (read only)
%	OldValue: handle of the previously selected object or empty if none was selected
%	NewValue: handle of the currently selected object
% handles    structure with handles and user data (see GUIDATA)
 
handles=guidata(hObject);
if (~strcmp(get(eventdata.NewValue,'Tag'), get(eventdata.OldValue,'Tag')))
    switch get(eventdata.NewValue,'Tag') % Get Tag of selected object.
        case 'radiobuttonPlotROI'
 
        case 'radiobuttonPlotCalibration'
 
        otherwise
            % Code for when there is no match.
    end
end

currRadioButton = get(get(handles.uibuttongroupView, 'SelectedObject'), 'Tag');

hZoom = zoom;
setAllowAxesZoom(hZoom,handles.axes,true);
set(hZoom,'Motion','both','Enable','on');

[filepath, filename, ext] = fileparts(FileName);
FileName = fullfile(filepath, 'results',  [filename, ext]);
fullpath = fullfile(filepath, 'results');
createDir(fullpath);

function createDir(pathstr)
if(~exist([pathstr], 'dir'))
    mkdir(pathstr)
end

function popupmenuAlgorithm_Callback(hObject, eventdata, handles)
% hObject    handle to popupmenuAlgorithm (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
 
persistent lastValue;
 
if (lastValue ~= get(hObject,'Value'))
    handles.('status').('doCalibrationUpdate') = true;
end
lastValue = get(hObject,'Value');

% create text entries in menu
colormapStr{1}= 'blue-red';
colormapStr{2}= 'red-blue';
colormapStr{3}= 'gray';
set(handles.popupmenuColorMap, 'String',colormapStr,'value',1);
 
% get current selection of menu
ColorMapContents = cellstr(get(handles.popupmenuColorMap,'String'));
ColormapSelect = ColorMapContents{get(handles.popupmenuColorMap, 'value')};
 
% select an action
switch ColormapSelect
    case 'blue-red'
        cmap = fliplr(jet(colorDepth));
        colormap(cmap(1:800,:));
    case 'red-blue'
        colormap(jet(colorDepth)); 
    case 'gray'
        colormap(gray(colorDepth)); 
end

% clear command window, figures and all variables
clc; clf; clear all; 
 
%% Common variables
 
FontSize = 12;
FontName = 'MyriadPro-Regular'; % or choose any other font
 
doExportPlot = true;
 
%% Plot variables
SaveDir = '';
 
TITLE = '';
    xLabelText = 'x-values';
    yLabelText = 'y-values';
    zLabelText = 'function values';
 
 
%%
SaveDir = '';
BaseDir = '';
%% Create Data
[x y data] = peaks(1000);
data = data - min(min(data));
data = data / max(max(data));
 
%% start plot
 
% figure dimensions in cm. I choose 1.5 or 2 times 
% the target size typically. If figure is display in
% document much smaller increase the fontsize.
 
figure_width = 14;  
figure_height = 10;
 
% --- setup plot windows
figuresVisible = 'on'; % 'off' for non displayed plots (will still be exported)
hfig = figure(1); clf;
    set(hfig,'Visible', figuresVisible)
 
    set(hfig, 'units', 'centimeters', 'pos', [5 5 figure_width figure_height])   
    set(hfig, 'PaperPositionMode', 'auto');    
    set(hfig, 'Renderer','zbuffer'); 
    set(hfig, 'Color', [1 1 1]); % Sets figure background
    set(gca, 'Color', [1 1 1]); % Sets axes background
 
% --- dimensions and position of plot 
hsp = subplot(1,1,1, 'Parent', hfig);
set(hsp,'Position',[0.12 0.15 0.80 0.8]);
 
colorDepth = 1000;

%%  setup axis plot properties
% shading interp; % interpolate pixels
axis on;      % display axis
axis tight;   % no white borders
 
set(gca, ...
    'Box'         , 'on'      , ...
    'TickDir'     , 'in'      , ...
    'TickLength'  , [.02 .02] , ...
    'XMinorTick'  , 'off'      , ...
    'YMinorTick'  , 'off'     , ...
    'XGrid'       , 'off'     , ...
    'YGrid'       , 'off'     , ...
    'XColor'      , [.0 .0 .0], ...
    'YColor'      , [.0 .0 .0], ...
    'LineWidth'   , 0.6        );
 
%% axis scales
 
% set(gca,'XTick',-15:5:15)
% set(gca,'YTick',-10:5:10)
 
%% label texts
 
% save handles to set up label properties
hTitle = title(TITLE);
hXLabel = xlabel(xLabelText);
hYLabel = ylabel(yLabelText);
 
%% set properties for all handles
set([gca, hTitle, hXLabel, hYLabel], ...
    'FontSize'   , FontSize    , ...
    'FontName'   , FontName);
 
 
%% last 'bug' fixes
 
% bring axis on top again (fix matlab bug)
set(gca,'Layer', 'top');
 
%% export
drawnow
 
doExportPlot = true;
if (doExportPlot)
    IMAGENAME = [SaveDir SaveName]; 
    print(hfig, ['-r' num2str(400)], [IMAGENAME '.png' ], ['-d' 'png']);    
end

xaxis = 0:0.1:25;
y1 = linspace(12.1712,12.7679, length(xaxis));
y2 = linspace(0.3597,-28.7745, length(xaxis));
 
[AX,H1,H2] = plotyy(xaxis, y1, xaxis, y2);
 
plotstyle; % sets only colors, linestyle and fonts

[AX,H1,H2] = plotyy(xaxis, y1, xaxis, y2);
 
% axis limits - x axis (min to max)
set(AX, 'XLim', [min(xaxis) max(xaxis)]);
set(AX(2),'XTick',[]);
 
% y1 axis limits 
set(AX(1), 'YLim', [min(y1) max(y1)]);
 
% y2 axis limits 
set(AX(2), 'YLim', [min(y2) max(y2)]);
 
plotstyle;

set(AX(1),'Box','off') % Turn off box of axis 1, which removes its right-hand ticks
set(AX(2),'Box','off') % Turn off box of axis 2, which removes its left-hand ticks

% dummy axes for the box and background color 
ax0 = axes; 
set (ax0, 'Box', 'on', 'Color', 'white', 'XTick', [], 'YTick', []); 
% first axes for left y-axis 
ax1 = axes ('Position', get (ax0, 'Position')); 
set (ax1, 'Box', 'off', 'Color', 'none', 'YAxisLocation', 'left'); 
% second axes for right y-axis assuming common x-axis controlled by ax1 
ax2 = axes ('Position', get (ax0, 'Position')); 
set (ax2, 'Box', 'off', 'Color', 'none', 'XTick', [], 'YAxisLocation', 'right');